![]() ![]() Download a pdb file from the PDB Databank. To see the path to your working directory, you can use ![]() Make a directory for your ~]$ mkdir tutorial ~]$ cd tutorial/ For help learning the command line in Unix, see:ġ. Use VMD Visualization Software to Examine the Protein StructureĪmberTools is used through Unix command line, which is accessed via a This tutorial requires AmberTools and VMD be properly installed ![]() More experienced users who are building a protein system for the first It is targeted toward beginners however it may also be useful to This tutorial will go over how to build a protein system using AmberTools.
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